Wiki Log

Chronological record of all wiki actions. Append-only. Format: ## [YYYY-MM-DD] action | subject Actions: ingest, update, query, lint, create, archive, delete When this file exceeds 500 entries, rotate: rename to log-YYYY.md, start fresh.

[2026-04-07] create | Wiki initialized

• Domain: Agent harnesses — software infrastructure for reliable autonomous coding agents
• Focus: Codex CLI, Claude Code, Hermes Agent, Gas Town/Gas City, and architectural patterns
• Structure created with SCHEMA.md, index.md, log.md, raw/, entities/, concepts/, comparisons/, queries/

[2026-04-07] ingest | Bulk ingestion: 15 sources

• Sources:
  • yegge-welcome-to-gas-town.md
  • yegge-future-of-coding-agents.md
  • yegge-gas-town-clown-show-to-v1.md
  • yegge-birthday-blog.md
  • yegge-welcome-to-the-wasteland.md
  • yegge-vibe-maintainer.md
  • openai-unlocking-codex-harness.md
  • openai-harness-engineering.md
  • anthropic-effective-harnesses.md
  • anthropic-three-agent-harness-infoq.md
  • raw/articles/daily-dose-anatomy-agent-harness.md
  • raw/articles/philschmid-agent-harness-2026.md
  • raw/articles/gupta-2026-is-agent-harnesses.md
  • raw/articles/orami-top-ai-agents-2026.md
  • newstack-openclaw-vs-hermes.md
  • raw/articles/calv-coding-agents-feb-2026.md
  • raw/articles/hn-gas-town-decoded.md
  • raw/articles/prius-of-gastown.md
  • codex-cli-github.md
  • hermes-agent-github.md
• Pages created: 12 (6 entities, 5 concepts, 2 comparisons, 1 query)

[2026-04-07] update | Wiki recovery after Codex-assisted audit

• Spawned parallel Codex collaborators to audit on-disk state, recover a minimal canonical source set, and propose the missing page set.
• Verified the wiki had become partially ingested: index/log referenced pages and sources that did not yet exist on disk.
• Restored 8 missing raw source summaries:
  • openai-unlocking-codex-harness.md
  • openai-harness-engineering.md
  • anthropic-effective-harnesses.md
  • anthropic-harness-design-long-running-apps.md
  • anthropic-three-agent-harness-infoq.md
  • codex-cli-github.md
  • hermes-agent-github.md
  • newstack-openclaw-vs-hermes.md
• Created 14 content pages:
  • codex-cli.md
  • claude-code.md
  • hermes-agent.md
  • gas-town.md
  • gas-city.md
  • openclaw.md
  • agent-harness-anatomy.md
  • harness-engineering.md
  • context-engineering.md
  • memory-persistence.md
  • work-management-primitives.md
  • harness-quality-comparison.md
  • harness-architecture-comparison.md
  • new-harness-design-notes.md
• Repaired SCHEMA.md so content-page rules and meta-file exceptions are explicit, and added meta / schema tags to the taxonomy.
• Rebuilt index.md to match the actual on-disk page set: 14 pages.
• Note: the earlier bulk-ingestion entry reflects intended scope at the time and does not exactly match the previously materialized on-disk state; this recovery entry records the repaired truth.

[2026-04-07] create | safety-and-permissions

• Added safety-and-permissions.md to normalize a central theme already present across Codex, Hermes, and OpenClaw sources.
• Cross-linked the new concept from codex-cli.md, hermes-agent.md, openclaw.md, and agent-harness-anatomy.md.
• Updated index.md to include the new concept and bump total pages from 14 to 15.

[2026-04-07] create | evaluation-and-review-loops

• Added evaluation-and-review-loops.md to capture evaluator agents, self-review loops, and PR-governance patterns across OpenAI, Anthropic, and Yegge sources.
• Cross-linked the new concept from claude-code.md, harness-engineering.md, and harness-quality-comparison.md.
• Updated index.md to include the new concept and bump total pages from 15 to 16.

[2026-04-07] ingest | Current-source refresh from parallel research agents

• Spawned three parallel research agents to expand the corpus across OpenAI/Codex, Anthropic/Claude Code, and persistent-orchestrator runtimes.
• Added 9 raw source summaries for newly researched primary sources:
  • openai-introducing-codex-app.md
  • openai-codex-app-server-readme.md
  • anthropic-claude-code-overview.md
  • anthropic-claude-code-memory.md
  • anthropic-claude-code-settings.md
  • hermes-agent-memory-docs.md
  • hermes-agent-api-server-docs.md
  • openclaw-agent-runtime-docs.md
  • yegge-gas-town-emergency-user-manual.md
• Updated major pages to reflect current surface models, memory systems, permissions, and orchestration details:
  • codex-cli.md
  • claude-code.md
  • hermes-agent.md
  • openclaw.md
  • gas-town.md
  • gas-city.md
  • agent-harness-anatomy.md
  • context-engineering.md
  • memory-persistence.md
  • safety-and-permissions.md
  • evaluation-and-review-loops.md
  • harness-architecture-comparison.md
  • harness-quality-comparison.md

[2026-04-07] create | codex-app-server

• Added codex-app-server.md because the App Server is now central enough in OpenAI’s public materials to warrant its own page.
• Updated index.md to include the new entity and bump total pages from 16 to 17.

[2026-04-07] create | harness-decision-matrix

• Added harness-decision-matrix.md to turn the current qualitative corpus into a weighted design-choice table.
• Cross-linked the new comparison from harness-quality-comparison.md and new-harness-design-notes.md so it participates in the existing synthesis graph.
• Updated index.md to include the new comparison and bump total pages from 17 to 18.

[2026-04-07] create | automation-and-background-work

• Added automation-and-background-work.md to capture the recurring-work pattern now visible across Codex app automations, Claude Code recurring tasks, and Hermes cron jobs.
• Cross-linked the new concept from context-engineering.md, work-management-primitives.md, safety-and-permissions.md, codex-cli.md, claude-code.md, and hermes-agent.md.
• Updated index.md to include the new concept and bump total pages from 18 to 19.

[2026-04-07] create | instruction-layering

• Added instruction-layering.md to separate durable scoped guidance from transcript memory, using AGENTS.md, CLAUDE.md, Hermes memory files, and OpenClaw bootstrap files as the main examples.
• Cross-linked the new concept from context-engineering.md, memory-persistence.md, safety-and-permissions.md, codex-cli.md, claude-code.md, hermes-agent.md, and openclaw.md.
• Updated index.md to include the new concept and bump total pages from 19 to 20.

[2026-04-07] ingest | orchestration and automation docs refresh

• Added 4 raw source summaries for current official docs:
  • anthropic-claude-code-subagents.md
  • anthropic-claude-code-agent-teams.md
  • anthropic-claude-code-scheduled-tasks.md
  • openai-codex-chatgpt-plan.md
• Updated synthesis pages to reflect the stronger distinction between subagents, session teams, and background work:
  • agent-harness-anatomy.md
  • automation-and-background-work.md
  • claude-code.md
  • harness-architecture-comparison.md
  • new-harness-design-notes.md

[2026-04-07] create | orchestration-topologies

• Added orchestration-topologies.md to capture the emerging split between inline subagents, separate-session teams, and full swarm/factory coordination.
• Cross-linked the new concept from agent-harness-anatomy.md, automation-and-background-work.md, claude-code.md, harness-architecture-comparison.md, and new-harness-design-notes.md.
• Updated index.md to include the new concept and bump total pages from 21 to 22.

[2026-04-08] ingest | arXiv round two on formal semantics for agent harnesses

• Added 6 raw paper summaries:
  • arxiv-zhang-2024-formal-methods-trustworthy-ai-agents.md
  • arxiv-lahiri-2026-intent-formalization.md
  • arxiv-conradie-2016-probabilistic-epistemic-updates.md
  • arxiv-kishida-2017-categories-for-dynamic-epistemic-logic.md
  • arxiv-wang-2026-structural-operational-semantics-true-concurrency.md
  • arxiv-edixhoven-2022-branching-pomsets-for-choreographies.md
• Extended SCHEMA.md with new tags for formal-methods, semantics, epistemics, and concurrency.
• Created 4 content pages:
  • formal-methods-for-agent-harnesses.md
  • probabilistic-epistemic-updates.md
  • partial-order-trace-semantics.md
  • arxiv-round-two-formal-semantics-for-agent-harnesses.md
• Updated existing synthesis pages to cross-link the new research layer:
  • harness-engineering.md
  • agent-harness-anatomy.md
  • work-management-primitives.md
  • orchestration-topologies.md
  • memory-persistence.md
• Updated index.md to include the new pages and bump total pages from 22 to 26.

[2026-04-08] ingest | formal-core cognition research pass

• Added 6 raw paper summaries:
  • arxiv-song-2024-lean-copilot.md
  • arxiv-endres-2023-natural-language-to-postconditions.md
  • arxiv-murphy-2024-llm-codegen-formal-spec-reactive-synthesis.md
  • arxiv-lin-2024-fvel.md
  • arxiv-burigana-2026-epddl.md
  • arxiv-allen-2025-sound-complete-neurosymbolic-reasoning.md
• Created 3 content pages:
  • theorem-proving-as-cognitive-kernel.md
  • formal-cognition-loop.md
  • formal-core-agent-architecture.md
• Updated existing synthesis pages to absorb the new formal-core angle:
  • formal-methods-for-agent-harnesses.md
  • new-harness-design-notes.md
• Updated index.md to include the new pages and bump total pages from 26 to 29.

[2026-04-08] ingest | non-linear harness interface research pass

• Added 9 raw paper summaries:
  • arxiv-sarkar-2023-code-relevant-ui.md
  • arxiv-angert-2023-spellburst.md
  • arxiv-rein-2024-live-programmers.md
  • arxiv-krause-glau-2023-code-proximal-dynamic-software-visualization.md
  • arxiv-kuhn-2010-spatial-software-visualization-ide.md
  • arxiv-li-2024-kishu-time-traveling-notebooks.md
  • arxiv-fang-2025-code-data-space-versioning.md
  • arxiv-chen-2022-nl2interface.md
  • arxiv-krause-glau-2024-code-review-software-city.md
• Created 1 content page:
  • non-linear-interface-options-for-next-harness.md
• Updated existing synthesis pages to absorb the new surface/interface angle:
  • agent-harness-anatomy.md
  • harness-engineering.md
  • new-harness-design-notes.md
• Updated index.md to include the new query and bump total pages from 29 to 30.

[2026-04-08] update | add diagrams to core concept pages

• Added Mermaid diagrams to clarify structure and flow on:
  • agent-harness-anatomy.md
  • work-management-primitives.md
  • formal-cognition-loop.md
  • orchestration-topologies.md
• Chose diagrams that mirror existing prose rather than introducing new claims: a harness component map, a work-object lifecycle, a formalization loop, and a topology comparison sketch.

[2026-04-08] lint | wiki grooming pass

• Audited the corpus against the current schema: index coverage, source existence, tag taxonomy, outbound wikilinks, and modified-page updated dates.
• Fixed the taxonomy violation in gas-city-but-its-just-codex.md by replacing ad hoc tags with existing schema tags.
• Bumped stale updated dates on the already edited comparison, concept, and query pages so frontmatter matches the current worktree.
• Added scripts/lint-wiki.sh and documented it in SCHEMA.md so future grooming does not depend on chat memory.

[2026-04-09] ingest | non-hierarchical orchestration research pass

• Added 11 raw paper summaries for non-hierarchical coordination patterns and dolphin-sociality inputs:
  • smith-1980-contract-net-protocol.md
  • gelernter-1985-generative-communication-in-linda.md
  • mcmanus-1991-design-and-analysis-tools-for-concurrent-blackboard-systems.md
  • olfati-saber-fax-murray-2007-consensus-and-cooperation-in-networked-multi-agent-systems.md
  • shehory-kraus-1998-methods-for-task-allocation-via-agent-coalition-formation.md
  • dias-zlot-kalra-stentz-2006-market-based-multirobot-coordination.md
  • brambilla-ferrante-birattari-dorigo-2013-swarm-robotics-review.md
  • lusseau-conradt-2009-unshared-consensus-decisions-dolphins.md
  • bruck-2013-decades-long-social-memory-in-bottlenose-dolphins.md
  • evans-krzyszczyk-frere-mann-2021-lifetime-stability-of-social-traits-in-bottlenose-dolphins.md
  • king-connor-kruetzen-allen-2021-cooperation-based-concept-formation-in-male-bottlenose-dolphins.md
• Created 3 content pages:
  • non-hierarchical-coordination-patterns.md
  • fission-fusion-orchestration.md
  • non-hierarchical-agent-orchestration.md
• Updated existing synthesis pages so the new material participates in the main design graph:
  • orchestration-topologies.md
  • new-harness-design-notes.md
• Updated index.md to include the new pages and bump total pages from 30 to 33.

[2026-04-09] ingest | Memento-Skills paper and companion code

• Added 2 raw source summaries:
  • arxiv-zhou-2026-memento-skills.md
  • memento-skills-github.md
• Created 1 content page:
  • memento-skills.md
• Updated existing synthesis pages so the new system participates in the main graph:
  • memory-persistence.md
  • harness-architecture-comparison.md
• Extended SCHEMA.md with a memento-skills implementation tag.
• Updated index.md to include the new entity and bump total pages from 33 to 34.

[2026-04-09] ingest | broader web patterns for non-linear harness interfaces

• Added 14 raw source summaries:
  • sketch-n-sketch.md
  • glamorous-toolkit-moldable-development-environment.md
  • arxiv-omar-2018-live-functional-programming-with-typed-holes.md
  • arxiv-doderlein-2026-spacetime-programming.md
  • pernosco-omniscient-printf-debugging.md
  • plutojl-interactive-programming-environment.md
  • vistrails-aosa.md
  • spatial-hypertext.md
  • langgraph-studio-first-agent-ide.md
  • temporal-web-ui.md
  • windmill-suspend-approval-prompts.md
  • trigger-dev-product.md
  • airflow-ui-overview.md
  • dagster-scaling-dag-visualization.md
• Created 1 content page:
  • web-patterns-for-non-linear-harness-interfaces.md
• Updated existing synthesis pages so the new material participates in the main interface graph:
  • non-linear-interface-options-for-next-harness.md
• Updated index.md to include the new query and bump total pages from 34 to 35.

[2026-04-09] ingest | under-explored coordination strategies arXiv pass

• Added 14 raw paper summaries:
  • arxiv-salemi-2025-llm-blackboard-data-discovery.md
  • arxiv-nakamura-2025-terrarium-blackboard-multi-agent-safety.md
  • arxiv-pugachev-2025-codecrdt-observation-driven-coordination.md
  • arxiv-duetting-2023-mechanism-design-large-language-models.md
  • arxiv-zhao-2025-llm-auction-generative-auction.md
  • arxiv-li-2025-lacp-agent-communication-protocol.md
  • arxiv-ehtesham-2025-survey-agent-interoperability-protocols.md
  • arxiv-ben-khaled-2026-g2cp-graph-grounded-communication-protocol.md
  • arxiv-zou-2025-blocka2a-secure-verifiable-interoperability.md
  • arxiv-miculicich-2025-veriguard-verified-code-generation.md
  • arxiv-ye-2025-x-mas-heterogeneous-llms.md
  • arxiv-yu-2025-dyntaskmas-dynamic-task-graph.md
  • arxiv-wang-2024-battleagentbench.md
  • arxiv-sun-2025-collab-overcooked.md
• Created 1 content page:
  • arxiv-under-explored-coordination-strategies.md
• Updated existing synthesis pages so the new coordination material participates in the main graph:
  • non-hierarchical-coordination-patterns.md
  • orchestration-topologies.md
  • formal-methods-for-agent-harnesses.md
• Updated index.md to include the new query and bump total pages from 34 to 35.

[2026-04-09] update | page-count recovery note

• The content-page total is 36, not 35.
• Two separate query-page ingests landed on 2026-04-09 (web-patterns-for-non-linear-harness-interfaces.md and arxiv-under-explored-coordination-strategies.md), so the later page-bump note undercounted by one.
• index.md now records the repaired total while preserving the earlier historical note as written.

[2026-04-09] ingest | legacy distributed-systems ideas and studio architecture spec

• Added 11 raw source summaries:
  • virtual-synchrony.md
  • chandy-lamport-algorithm.md
  • vector-clock.md
  • failure-detector.md
  • jif.md
  • session-type.md
  • viewstamped-replication-revisited.md
  • optimistic-replication.md
  • self-certifying-file-system.md
  • session-guarantees-weakly-consistent-replicated-data.md
  • escrow-transactional-method.md
• Created 2 content pages:
  • legacy-distributed-systems-ideas-for-moldable-operations-studio.md
  • moldable-operations-studio-architecture-spec.md
• Updated existing synthesis pages so the new semantics layer participates in the main design graph:
  • new-harness-design-notes.md
  • web-patterns-for-non-linear-harness-interfaces.md
• Updated index.md to include the new queries and bump total pages from 36 to 38.

[2026-04-09] lint | maintenance pass

• Ran scripts/lint-wiki.sh and a structural audit across the content corpus.
• Fixed invalid YAML frontmatter quoting in:
  • arxiv-round-two-formal-semantics-for-agent-harnesses.md
  • arxiv-under-explored-coordination-strategies.md
• Repaired inbound navigation for previously orphaned query pages by cross-linking them from:
  • formal-methods-for-agent-harnesses.md
  • formal-cognition-loop.md
  • non-hierarchical-coordination-patterns.md
• Hardened scripts/lint-wiki.sh to parse YAML frontmatter, so colon-bearing titles now fail fast instead of slipping past the shell-only checks.
• Re-ran lint: pass, 36 content pages checked, with no orphan content pages in the follow-up structural scan.

[2026-04-09] update | staged lint polish

• Adjusted scripts/lint-wiki.sh so the updated: check inspects staged modified content pages when a commit is in flight, rather than only unstaged worktree edits.
• Limited that updated: rule to modified tracked pages (--diff-filter=M), so newly introduced historical pages can keep their original creation/update dates.
• Guarded the git-diff branch so staged-tree audits outside a git checkout do not emit misleading repo warnings.

[2026-04-09] ingest | schema pass and sci-fi audit for moldable operations studio

• Added 11 raw source summaries:
  • star-trek-lcars.md
  • battlestar-galactica-dradis.md
  • minority-report-film.md
  • wargames.md
  • foundation-prime-radiant.md
  • machineries-of-empire.md
  • ancillary-justice.md
  • quantum-thief.md
  • embassytown.md
  • the-city-and-the-city.md
  • diaspora-novel.md
• Created 2 content pages:
  • moldable-operations-studio-schema-pass.md
  • sci-fi-audit-for-moldable-operations-studio.md
• Updated existing synthesis pages so the new concrete and speculative layers participate in the main design graph:
  • moldable-operations-studio-architecture-spec.md
  • web-patterns-for-non-linear-harness-interfaces.md
• Updated index.md to include the new queries and bump total pages from 38 to 40.
• Re-ran lint after the fix: pass.

[2026-04-09] ingest | grounded research for moldable operations studio ideas

• Added 20 raw source summaries:
  • yang-wigdor-2014-panelrama.md
  • klokmose-et-al-2015-webstrates.md
  • bragdon-et-al-2011-code-space.md
  • danielsson-alvinius-larsson-2014-common-operating-picture.md
  • nandiganahalli-et-al-2014-mode-confusion-detection.md
  • honarmand-torrellas-2014-replay-debugging.md
  • ko-myers-2009-java-whyline.md
  • stasko-gorg-liu-2008-jigsaw.md
  • andrews-north-2012-analysts-workspace.md
  • groth-streefkerk-2006-provenance-annotation-visual-exploration.md
  • amershi-et-al-2015-modeltracker.md
  • wexler-et-al-2019-what-if-tool.md
  • malkhi-lamport-zhou-2008-stoppable-paxos.md
  • rfc-9420-mls-protocol.md
  • rivest-lampson-1996-sdsi.md
  • birgisson-et-al-2014-macaroons.md
  • efstathopoulos-et-al-2005-asbestos.md
  • finkelstein-et-al-1992-viewpoints.md
  • foster-et-al-2007-bidirectional-tree-transformations.md
  • green-karvounarakis-tannen-2007-provenance-semirings.md
• Created 1 content page:
  • grounding-moldable-operations-studio-ideas-in-real-research.md
• Updated existing synthesis pages so the grounded-research layer participates in the main design graph:
  • moldable-operations-studio-architecture-spec.md
  • moldable-operations-studio-schema-pass.md
  • sci-fi-audit-for-moldable-operations-studio.md
• Updated index.md to include the new query and bump total pages from 40 to 41.

[2026-04-09] ingest | wireframe pass for moldable operations studio

• Added 1 asset:

  • raw/assets/moldable-operations-studio-wireframes.excalidraw

• Created 1 content page:

  • moldable-operations-studio-wireframes.md

• Updated existing synthesis pages so the wireframe layer participates in the main design graph:

  • moldable-operations-studio-architecture-spec.md
  • moldable-operations-studio-schema-pass.md
  • grounding-moldable-operations-studio-ideas-in-real-research.md
  • sci-fi-audit-for-moldable-operations-studio.md

• Updated index.md to include the new query; total pages now 42.

• The content-page total is 44, not 42.

• Concurrent additions landed in the corpus while the wireframe pass was in flight, including self-evolving-workflows.md and arxiv-self-evolving-workflows-for-codex-control-plane.md.

• index.md now records the repaired total while preserving the earlier line-level history.

[2026-04-09] ingest | self-evolving workflows for gas-city-but-its-just-codex

• Added 16 raw source summaries:
  • gas-city-but-its-just-codex-repo-2026-04-09.md
  • arxiv-zhang-2024-aflow.md
  • arxiv-li-2024-autoflow.md
  • arxiv-wang-2024-agent-workflow-memory.md
  • arxiv-hu-2024-automated-design-of-agentic-systems.md
  • arxiv-wang-2025-evoagentx.md
  • arxiv-wang-2026-learning-to-compose-agentic-workflow-generation.md
  • arxiv-xu-2026-hyevo.md
  • arxiv-zhao-2025-a2flow.md
  • arxiv-shen-2026-skillfoundry.md
  • arxiv-zhang-2026-evoskills.md
  • arxiv-wang-2026-skillx.md
  • arxiv-ma-2026-scaling-coding-agents-via-atomic-skills.md
  • arxiv-rhodes-2026-compiled-memory.md
  • arxiv-shinn-2023-reflexion.md
  • arxiv-zhao-2023-expel.md
• Created 2 content pages:
  • self-evolving-workflows.md
  • arxiv-self-evolving-workflows-for-codex-control-plane.md
• Updated existing pages to connect the new workflow-evolution layer into the main graph:
  • gas-city-but-its-just-codex.md
  • work-management-primitives.md
  • memory-persistence.md
• Updated index.md to include the new concept and query and bump total pages from 41 to 43.
• Re-ran lint after the ingest: pass, 43 content pages checked.

[2026-04-09] ingest | broader arxiv sweep for self-evolving workflows

• Added 19 additional raw source summaries to widen the literature map beyond the first direct-hit pass:
  • arxiv-qiao-2024-benchmarking-agentic-workflow-generation.md
  • arxiv-zheng-2025-mermaidflow.md
  • arxiv-wang-2026-query-level-workflows.md
  • arxiv-ma-2026-judgeflow.md
  • arxiv-wang-2025-dyflow.md
  • arxiv-wang-2025-self-improving-agent-skill-library.md
  • arxiv-ye-2026-meta-context-engineering.md
  • arxiv-du-2025-bottom-up-skill-evolution.md
  • arxiv-zhai-2025-agentevolver.md
  • arxiv-qian-2025-metaagent.md
  • arxiv-banerjee-2026-severa.md
  • arxiv-ye-2025-sop-agent.md
  • arxiv-li-2025-sopbench.md
  • arxiv-huo-2026-atommem.md
  • arxiv-liu-2026-graph-of-skills.md
  • arxiv-ni-2026-trace2skill.md
  • arxiv-zhang-2026-memskill.md
  • arxiv-xia-2026-metaclaw.md
  • arxiv-xu-2025-robustflow.md
• Expanded the main synthesis pages so the literature map now includes evaluator loops, robustness, retrieval over large skill libraries, and learnable memory/context routines:
  • self-evolving-workflows.md
  • arxiv-self-evolving-workflows-for-codex-control-plane.md
  • gas-city-but-its-just-codex.md
  • index.md
• Re-ran lint after the broader sweep: pass, 43 content pages checked.

[2026-04-09] ingest | rl gyms and executable environments for ai harnesses

• Added 20 raw source summaries for executable benchmark and training environments:
  • arxiv-zhou-2023-webarena.md
  • arxiv-chezelles-2024-browsergym-ecosystem.md
  • arxiv-koh-2024-visualwebarena.md
  • arxiv-drouin-2024-workarena.md
  • arxiv-boisvert-2024-workarena-plus-plus.md
  • arxiv-pan-2024-webcanvas.md
  • arxiv-xie-2024-osworld.md
  • arxiv-bonatti-2024-windows-agent-arena.md
  • arxiv-trivedi-2024-appworld.md
  • arxiv-ma-2024-agentboard.md
  • arxiv-xi-2024-agentgym.md
  • arxiv-nathani-2025-mlgym.md
  • arxiv-pan-2024-swe-gym.md
  • arxiv-yao-2024-tau-bench.md
  • arxiv-chuang-2026-proxy-state-based-evaluation.md
  • arxiv-chen-2025-rl-long-horizon-interactive-llm-agents.md
  • arxiv-lai-2025-computerrl.md
  • arxiv-mehta-2026-enterprisebench-corecraft.md
  • arxiv-mialon-2023-gaia.md
  • arxiv-yao-2022-webshop.md
• Created 1 content page:
  • rl-gyms-and-executable-environments-for-ai-harnesses.md
• Updated existing concept pages so environment substrates connect back into the main harness graph:
  • evaluation-and-review-loops.md
  • harness-engineering.md
• Updated index.md to include the new query and corrected the total page count from 43 to 45 after a recount.
• Re-ran lint after the gym sweep: pass, 45 content pages checked.

[2026-04-10] ingest | neural-native programming via internal-layer interfaces

• Added 35 raw source notes to resolve the user-provided NNPL draft into explicit bibliography entries:
  • neural-native-programming-direct-internal-layer-interfaces-draft-2026-04-10.md
  • transformer-circuits-mathematical-framework.md
  • logit-lens-lesswrong.md
  • anthropic-toy-models-of-superposition.md
  • anthropic-monosemantic-features.md
  • nnsight-docs.md
  • baukit-github.md
  • doug-github.md
  • arxiv-vaswani-2017-attention-is-all-you-need.md
  • geva-2021-transformer-feed-forward-layers-are-key-value-memories.md
  • arxiv-belrose-2023-tuned-lens.md
  • arxiv-hewitt-2019-structural-probe.md
  • arxiv-meng-2022-locating-and-editing-factual-associations-in-gpt.md
  • arxiv-turner-2023-steering-language-models-with-activation-engineering.md
  • arxiv-panickssery-2023-steering-llama-2-via-contrastive-activation-addition.md
  • arxiv-dathathri-2019-pplm.md
  • arxiv-wu-2024-pyvene.md
  • arxiv-li-2023-inference-time-intervention.md
  • arxiv-zou-2023-representation-engineering.md
  • arxiv-burns-2022-discovering-latent-knowledge.md
  • arxiv-hu-2021-lora.md
  • arxiv-reed-2015-neural-programmer-interpreters.md
  • arxiv-kusner-2017-grammar-variational-autoencoder.md
  • arxiv-van-den-oord-2017-neural-discrete-representation-learning.md
  • arxiv-hong-2020-latent-programmer.md
  • arxiv-macfarlane-2024-searching-latent-program-spaces.md
  • kanerva-2009-hyperdimensional-computing.md
  • plate-1995-holographic-reduced-representations.md
  • arxiv-gayler-2004-vector-symbolic-architectures.md
  • arxiv-weiss-2021-thinking-like-transformers.md
  • arxiv-lindner-2023-tracr.md
  • arxiv-tomkins-flanagan-2025-differentiable-vector-symbolic-types.md
  • arxiv-chen-2021-evaluating-llms-trained-on-code.md
  • arxiv-austin-2021-program-synthesis-with-large-language-models.md
  • arxiv-hendrycks-2021-measuring-coding-challenge-competence-with-apps.md
• Extended SCHEMA.md with mechanistic-interpretability and program-synthesis tags so the new material can be filed without abusing older categories.
• Created 2 content pages:
  • neural-native-programming.md
  • neural-native-programming-via-direct-interfaces-to-transformer-internal-layers.md
• Updated existing synthesis pages so the new topic participates in the current harness graph:
  • formal-cognition-loop.md
  • new-harness-design-notes.md
  • non-linear-interface-options-for-next-harness.md
• Updated navigation/meta files:
  • SCHEMA.md
  • index.md

[2026-04-10] lint | neural-native programming ingest maintenance pass

• Ran scripts/lint-wiki.sh after the ingest.
• Initial lint failed because several already-modified tracked pages still carried updated: 2026-04-09 even though the worktree date had advanced.
• Bumped updated to 2026-04-10 on the following pages to restore schema consistency:
  • evaluation-and-review-loops.md
  • harness-engineering.md
  • memory-persistence.md
  • work-management-primitives.md
  • gas-city-but-its-just-codex.md
  • web-patterns-for-non-linear-harness-interfaces.md
• Re-ran lint: pass, 47 content pages checked.

[2026-04-10] create | neural-native programming research program

• Added neural-native-programming-research-program.md as a tighter staged plan with explicit promotion gates, kill criteria, benchmark order, and first-quarter deliverables.
• Cross-linked the new plan page from:
  • neural-native-programming.md
  • neural-native-programming-via-direct-interfaces-to-transformer-internal-layers.md
• Updated index.md to include the new query and bump total pages from 47 to 48.

[2026-04-10] lint | neural-native research-program follow-up

• Re-ran scripts/lint-wiki.sh after adding the research-program page.
• Result: pass, 48 content pages checked.

[2026-04-10] ingest | rl gym entity pages and atropos fit analysis

• Added 2 repo-grounded raw source summaries for local harness integration state:
  • hermes-atropos-integration-2026-04-09.md
  • another-harness-repo-2026-04-09.md
• Created 21 entity pages for the executable-environment and gym layer:
  • agentboard.md
  • agentgym.md
  • appworld.md
  • atropos.md
  • browsergym.md
  • computer-rl.md
  • enterprisebench-corecraft.md
  • gaia.md
  • mlgym.md
  • osworld.md
  • proxy-state-based-evaluation.md
  • sopbench.md
  • swe-gym.md
  • tau-bench.md
  • visualwebarena.md
  • webarena.md
  • webcanvas.md
  • webshop.md
  • windows-agent-arena.md
  • workarena.md
  • workarena-plus-plus.md
• Created 1 synthesis page:
  • another-harness-and-atropos.md
• Updated the main gym synthesis and surrounding concept pages so the new environment layer participates in the harness graph:
  • rl-gyms-and-executable-environments-for-ai-harnesses.md
  • evaluation-and-review-loops.md
  • harness-engineering.md
  • index.md
• Recounted content pages and updated index total from 48 to 70.
• Re-ran lint after the entity-page pass: pass, 70 content pages checked.

[2026-04-10] ingest | concrete another-harness atropos schema

• Added 1 raw source summary for the new repo-native Atropos sidecar design:
  • another-harness-atropos-environment-schema-2026-04-10.md
• Created 1 synthesis page:
  • another-harness-atropos-environment-schema.md
• Updated existing pages so the concrete schema is linked back into the gym and fit-analysis graph:
  • another-harness-and-atropos.md
  • rl-gyms-and-executable-environments-for-ai-harnesses.md
  • index.md
• Updated index.md to include the new query and bump total pages from 70 to 71.
• Re-ran lint after the schema sync: pass, 71 content pages checked.

[2026-04-10] update | public repo rename and github pages publishing layer

• Renamed the public GitHub repository from wiki to agent-harness-wiki.
• Added a lightweight MkDocs publishing layer with:
  • mkdocs.yml
  • docs-requirements.txt
  • scripts/prepare_site_docs.py
  • .github/workflows/pages.yml
  • README.md updates for local preview and published-site usage
  • .gitignore rules for generated site directories and local virtualenvs
• Enabled GitHub Pages in workflow-deployment mode and updated the Pages workflow to current action major versions to avoid stale Node 20 warnings.
• Verified the docs build locally after preparing the generated docs tree.
• Re-ran lint after the publishing-layer pass: pass, 70 content pages checked.

[2026-04-10] update | another-harness work-item closure environment prototype

• Added 1 raw source summary for the first live executable environment slice in another-harness:
  • another-harness-work-item-closure-environment-2026-04-10.md
• Created 1 synthesis page:
  • another-harness-work-item-closure-environment.md
• Updated existing pages so the executable prototype is linked back into the Atropos fit/schema/gym graph:
  • another-harness-atropos-environment-schema.md
  • another-harness-and-atropos.md
  • rl-gyms-and-executable-environments-for-ai-harnesses.md
  • atropos.md
  • index.md
• Updated index.md to include the new query and bump total pages from 71 to 72.
• Re-ran lint after the prototype sync: pass.

[2026-04-10] update | seeded user evolution log

• Added top-level meta file:
  • USER_EVOLUTION_LOG.md
• Designed a durable entry format that separates explicit observations from inferred trends, records confidence, and preserves evidence, uncertainty, and what-to-watch-next.
• Seeded initial entries for 2026-04-05 through 2026-04-10 covering:
  • tightening acceptance and review standards
  • shift from compatibility analysis toward switchable Hermes profiles
  • movement toward non-linear / moldable operations studio interfaces
  • clearer separation of formulas, skills, memory, and evaluation in self-evolving workflow research
  • explicit agency-preserving collaboration norms

[2026-04-10] ingest | multiplayer harness and p2p network research pass

• Added 7 raw source summaries for the local-first, peer-to-peer, interoperability, and multiplayer-surface layer:
  • local-first-software.md
  • pushpin-peer-to-peer-collaboration.md
  • jupyterlab-real-time-collaboration.md
  • visual-studio-live-share.md
  • google-agent2agent-protocol.md
  • merkle-crdts.md
  • maymounkov-mazieres-2002-kademlia.md
• Created 1 synthesis page:
  • multiplayer-agent-harnesses-and-p2p-networks.md
• Updated existing synthesis pages so the new multiplayer/federated direction is linked into the harness graph:
  • new-harness-design-notes.md
  • non-hierarchical-agent-orchestration.md
  • index.md
• Updated index.md to include the new query and bump total pages from 72 to 73.
• Re-ran lint after the research pass: pass, 73 content pages checked.

[2026-04-10] create | multiplayer harness build strategy

• Created 1 synthesis page answering the implementation-order question directly:
  • how-to-build-a-multiplayer-harness-network.md
• Updated the multiplayer research synthesis to point at the new implementation-focused page:
  • multiplayer-agent-harnesses-and-p2p-networks.md
• Updated index.md to include the new query and bump total pages from 73 to 74.
• Re-ran lint after the build-strategy pass: pass.

[2026-04-10] create | multiplayer harness inspection guide

• Created 1 synthesis page for deciding what to inspect first when shaping the design:
  • high-impact-artifacts-for-multiplayer-harness-design.md
• Updated the build-strategy page to point at the new inspection guide:
  • how-to-build-a-multiplayer-harness-network.md
• Updated index.md to include the new query and bump total pages from 74 to 75.
• Re-ran lint after the inspection-guide pass: pass.

[2026-04-10] update | another-harness evaluator-discipline environment prototype

• Added 1 raw source summary for the second live executable environment slice in another-harness:
  • another-harness-evaluator-discipline-environment-2026-04-10.md
• Created 1 synthesis page:
  • another-harness-evaluator-discipline-environment.md
• Updated existing pages so the evaluator prototype is linked back into the Atropos fit/schema/gym graph:
  • another-harness-work-item-closure-environment.md
  • another-harness-atropos-environment-schema.md
  • another-harness-and-atropos.md
  • rl-gyms-and-executable-environments-for-ai-harnesses.md
  • atropos.md
  • index.md
• Updated index.md to include the new query and bump total pages from 75 to 76.
• Re-ran lint after the evaluator-prototype sync: pass.

[2026-04-10] ingest | sovereignty and observed-goals deep-dive for multiplayer harnesses

• Added 12 raw source summaries spanning portable attestations, trust management, proof-carrying authorization, provenance, commitments, governance, goal recognition, and socially translucent collaboration:
  • w3c-verifiable-credentials-data-model-v2.md
  • li-mitchell-winsborough-role-based-trust-management-framework.md
  • bauer-schneider-felten-appel-proof-carrying-authorization.md
  • claimchain.md
  • torres-arias-2019-in-toto.md
  • w3c-prov-dm.md
  • medina-mora-winograd-flores-flores-action-workflow-approach.md
  • fornara-colombetti-commitment-based-agent-communication-language.md
  • singh-chopra-computational-governance-violable-contracts.md
  • keren-gal-karpas-goal-recognition-design.md
  • ramirez-geffner-probabilistic-plan-recognition.md
  • erickson-et-al-socially-translucent-systems.md
• Added 2 synthesis pages from the multi-round deep-dive:
  • commitment-governance-semantics-for-multiplayer-harness.md
  • sovereignty-and-observed-goals-ledgers-for-multiplayer-harnesses.md
• Updated existing synthesis/navigation pages to link the new sovereignty track into the harness graph:
  • high-impact-artifacts-for-multiplayer-harness-design.md
  • multiplayer-agent-harnesses-and-p2p-networks.md
  • index.md
• Recounted content pages and updated index total from 76 to 78.
• Note: the commitment/governance synthesis page was materialized during the deeper research pass itself; this entry records it explicitly so the log matches the on-disk truth.

[2026-04-10] create | sovereign identity and observed-goals schema pass

• Created 1 concrete schema page layering sovereignty and non-scalar trust into the control plane:
  • sovereign-identity-and-observed-goals-schema-pass.md
• Updated existing synthesis pages so the new schema pass is linked into the research graph:
  • sovereignty-and-observed-goals-ledgers-for-multiplayer-harnesses.md
  • moldable-operations-studio-schema-pass.md
  • high-impact-artifacts-for-multiplayer-harness-design.md
  • index.md
• Updated index.md to include the new query and bump total pages from 78 to 79.
• Re-ran lint after the schema pass: pass, 79 content pages checked.

[2026-04-10] create | node card and minimum adapter contract

• Created 1 concrete federation-boundary page:
  • node-card-and-minimum-adapter-contract.md
• Updated existing synthesis/schema pages so the adapter contract is linked into the multiplayer and sovereignty graph:
  • how-to-build-a-multiplayer-harness-network.md
  • sovereign-identity-and-observed-goals-schema-pass.md
  • high-impact-artifacts-for-multiplayer-harness-design.md
  • index.md
• Updated index.md to include the new query and bump total pages from 79 to 80.
• Re-ran lint after the contract pass: pass, 80 content pages checked.

[2026-04-11] create | prompt optimization research and dspy follow-ups

• Created 1 raw research batch note capturing arXiv/OpenAlex-grounded bibliography and notes:
  • prompt-optimization-dspy-followups-2026-04-11.md
• Created 1 new entity page for the central framework and 1 synthesis/query page:
  • dspy.md
  • prompt-optimization-and-dspy-follow-ups.md
• Updated schema and navigation to include DSPy in the implementation taxonomy and add both new pages to the index:
  • SCHEMA.md
  • index.md
• Intended focus: RL prompt optimization, prompt-program systems, and the early research line following DSPy.

[2026-04-11] create | prompt optimization timeline and harness lessons

• Created 1 follow-on synthesis page that turns the prompt-optimization survey into a chronological map and an agent-harness design memo:
  • prompt-optimization-timeline-and-harness-lessons.md
• Updated related prompt-program pages and navigation so the new synthesis is linked into the graph:
  • prompt-optimization-and-dspy-follow-ups.md
  • dspy.md
  • index.md
• Updated index total from 83 to 84.

[2026-04-11] create | prompt-program deployment open questions

• Created 1 new synthesis page focused on deployment-time research gaps for prompt programs and writable instruction artifacts:
  • prompt-program-deployment-open-questions.md
• Updated navigation to include the new page in the query index:
  • index.md
• Focus: compile-time vs runtime adaptation, promotion and rollback, safety constraints, drift, human oversight, memory substrates, and long-lived harness packaging.
• Updated index total from 84 to 85.

[2026-04-11] create | prompt optimization open questions fan-out

• Created 2 raw research batch notes for the fan-out clusters:
  • prompt-optimization-eval-transfer-robustness-open-questions-2026-04-11.md
  • prompt-optimization-representation-optimizer-open-questions-2026-04-11.md
• Created 4 query/synthesis pages covering the umbrella map and the three main open-question clusters:
  • open-questions-in-prompt-optimization-and-language-programs.md
  • prompt-optimization-eval-transfer-robustness-open-questions.md
  • prompt-program-representation-and-optimizer-open-questions.md
  • prompt-program-deployment-open-questions.md
• Updated navigation and page metadata to index the new pages and normalize frontmatter/tags for lint correctness:
  • index.md
  • prompt-optimization-eval-transfer-robustness-open-questions.md
  • prompt-program-representation-and-optimizer-open-questions.md
  • prompt-program-deployment-open-questions.md
• Updated index total from 85 to 88.

[2026-04-11] update | another-harness run-history decision

• Added 1 raw repository-synthesis note:
  • another-harness-run-history-decision-2026-04-11.md
• Updated the main Atropos fit synthesis page so it now records the repo’s explicit storage answer:
  • another-harness-and-atropos.md
• Updated index.md so the query summary reflects the new run-history stance while keeping total content pages at 88.
• Captured the repo’s current decision that state/runs/ remains non-canonical and that historically important attempts should live as derived evidence bundles under docs/plans/artifacts/ until real multi-attempt pressure says otherwise.

[2026-04-11] lint | wiki pass after another-harness run-history sync

• Ran scripts/lint-wiki.sh after the run-history decision sync.
• Confirmed the updated query/index metadata and the new raw note pass the current wiki structural checks.

[2026-04-11] create | self-evolving workflow tool coverage

• aflow.md
• agent-workflow-memory.md
• agentevolver.md
• atommem.md
• autoflow.md
• compiled-memory.md
• dyflow.md
• evoskills.md
• expel.md
• graph-of-skills.md
• judgeflow.md
• memskill.md
• mermaidflow.md
• metaagent.md
• metaclaw.md
• reflexion.md
• robustflow.md
• sage.md
• severa.md
• skillfoundry.md
• skillx.md
• sop-agent.md
• trace2skill.md
• worfbench.md
• worfeval.md
• Updated the query page to add the missing raw sources for Learning to Compose and AgentEvolver, and replaced plain-text system names with wikilinks where appropriate:
  • arxiv-self-evolving-workflows-for-codex-control-plane.md
• Updated the core concept page so its main workflow, evaluation, memory, and skill-system examples now resolve to concrete entity pages:
  • self-evolving-workflows.md
• Updated index.md to include the new entities and bump total pages from 88 to 113.

[2026-04-11] lint | self-evolving workflow tool coverage pass

• Ran scripts/lint-wiki.sh after adding the workflow, memory, skill-library, and self-evolving-agent entity pages.
• Confirmed index coverage and wikilink resolution for the new entity set: pass, 113 content pages checked.

[2026-04-11] create | prompt optimization tool coverage

• Created 5 raw paper notes so the main prompt-program optimizer systems now have first-class source stubs:
  • arxiv-deng-2022-rlprompt.md
  • arxiv-yuksekgonul-2024-textgrad.md
  • arxiv-agrawal-2025-gepa.md
  • arxiv-singhvi-2023-dspy-assertions.md
  • schnabel-2024-sammo.md
• Created 5 entity pages so the prompt-optimization literature has concrete reusable nodes rather than only query-page mentions:
  • rlprompt.md
  • textgrad.md
  • gepa.md
  • dspy-assertions.md
  • sammo.md
• Updated the central prompt-program synthesis pages so the new systems resolve as concrete entities and the DSPy follow-up line is less foggy:
  • dspy.md
  • prompt-optimization-and-dspy-follow-ups.md
  • prompt-optimization-timeline-and-harness-lessons.md
  • prompt-program-representation-and-optimizer-open-questions.md
  • prompt-optimization-eval-transfer-robustness-open-questions.md
  • prompt-program-deployment-open-questions.md
  • index.md
• Normalized the index total to 119 after adding the new prompt-optimizer entity set and reconciling prompt-query coverage.

[2026-04-11] create | research on the ten prompt-optimization questions

• Added 1 supporting raw research note for extra cross-cutting evaluator / programming-language / release-engineering references:
  • additional-cross-cutting-prompt-program-papers-2026-04-11.md
• Created 1 question-by-question synthesis page covering the ten cross-cutting open questions with anchor papers and concise research reads:
  • research-on-open-questions-in-prompt-optimization-and-language-programs.md
• Updated related prompt-program navigation so the new research map is reachable from the umbrella open-questions page and indexed in the query catalog:
  • open-questions-in-prompt-optimization-and-language-programs.md
  • index.md
• Updated index total from 118 to 119.

[2026-04-11] create | another-harness model-docs drift checker

• Added 1 raw repository-synthesis note:
  • another-harness-model-docs-drift-check-2026-04-11.md
• Created 1 query page capturing why the repo’s first Lean-backed drift fence targets the attempt-vs-stream grounding distinction:
  • another-harness-model-docs-drift-checker.md
• Updated navigation so the new page is indexed alongside the other another-harness slices:
  • index.md
• Updated index total from 119 to 120.

[2026-04-11] lint | wiki pass after model-docs drift sync

• Ran scripts/lint-wiki.sh after the 0032 sync.
• Confirmed the new raw note, query page, and index update pass the current wiki structural checks.

[2026-04-11] create | another-harness resume-recover environment

• Added 1 raw repository-synthesis note:
  • another-harness-resume-recover-environment-2026-04-11.md
• Created 1 query page capturing the repo’s first executable recovery family:
  • another-harness-resume-recover-environment.md
• Updated navigation so the new page is indexed alongside the other another-harness slices:
  • index.md
• Updated index total from 129 to 130.

[2026-04-11] lint | wiki pass after resume-recover sync

• Ran scripts/lint-wiki.sh after the 0036 sync.
• Confirmed the new raw note, query page, and index update pass the current wiki structural checks.

[2026-04-11] create | three more prompt-optimizer branches

• Added 5 raw paper notes for the runtime-adaptation, RL-over-program, and planning/evolution optimizer branches:
  • arxiv-zhang-2022-tempera.md
  • azim-2025-autodspy.md
  • arxiv-yang-2023-opro.md
  • arxiv-fernando-2023-promptbreeder.md
  • arxiv-wang-2023-promptagent.md
• Created 5 entity pages so these optimizer families now have first-class wiki nodes:
  • tempera.md
  • autodspy.md
  • opro.md
  • promptbreeder.md
  • promptagent.md
• Created 1 synthesis page that turns the newly covered systems into a regime map for harness design:
  • prompt-optimizer-regimes-for-harnesses.md
• Updated the central DSPy and prompt-optimization pages so the new systems resolve as concrete entities and the optimizer-family map is more explicit:
  • dspy.md
  • rlprompt.md
  • prompt-optimization-and-dspy-follow-ups.md
  • prompt-optimization-timeline-and-harness-lessons.md
  • prompt-program-representation-and-optimizer-open-questions.md
  • prompt-program-deployment-open-questions.md
  • research-on-open-questions-in-prompt-optimization-and-language-programs.md
  • index.md
• Updated index total from 120 to 126.

[2026-04-11] update | quartz publishing migration

• Replaced the GitHub Pages publishing path from MkDocs with Quartz 4 while keeping the repository-root markdown corpus canonical.
• Added scripts/prepare_quartz_content.py to materialize the wiki into .quartz-site/content/, synthesize titles for root meta pages, and sanitize frontmatter for Quartz consumption.
• Vendored Quartz under .quartz-site/ from upstream commit 59b5807, customized the local Quartz config/layout, and switched .github/workflows/pages.yml to a Node 22 + Quartz build.
• Verified the Quartz build locally; the explorer/sidebar navigation replaces the brittle top dropdown navbar, and Mermaid diagrams render with built-in expand/zoom controls.

[2026-04-11] create | repo architecture plans from the ten prompt-program questions

• Created 2 repo-grounded plan documents that translate the ten cross-cutting prompt-program questions into concrete architecture stances and sequencing ladders:
  • /Users/ericfode/src/another-harness/docs/plans/2026-04-11-another-harness-prompt-program-architecture-plan.md
  • /Users/ericfode/src/gas-city-but-its-just-codex/docs/plans/2026-04-11-gascity-prompt-program-architecture-plan.md
• Added 1 wiki synthesis page summarizing both repo plans and their main divergence in design center:
  • prompt-program-architecture-plans-for-another-harness-and-gas-city.md
• Updated prompt-program navigation so the new cross-repo plan page is indexed from the query catalog and linked from the umbrella question map:
  • open-questions-in-prompt-optimization-and-language-programs.md
  • index.md
• Updated index total from 126 to 127.

[2026-04-11] create | context visualization for harnesses

• Added 1 raw research batch note covering provenance/trust visualization, context-assembly UX, and attention/attribution caveats:
  • context-visualization-research-2026-04-11.md
• Created 2 synthesis pages: one for the overall context/provenance/trust surface and one for the narrower attention/attribution question:
  • context-assembly-visualization-for-harnesses.md
  • attention-and-attribution-views-for-llm-harnesses.md
• Updated nearby context/provenance pages so the new research is linked into the existing moldable-operations and context-engineering graph:
  • context-engineering.md
  • web-patterns-for-non-linear-harness-interfaces.md
  • index.md
• Updated index total from 127 to 129.

[2026-04-12] update | repo recovery and scratch hygiene

• Recovered the stranded local wiki additions from the older spike/quartz-nav-rescue worktree onto main, including the resume-recover and context-visualization query pages, their supporting raw notes, and one additional workflow-visualization research note.
• Updated context-engineering.md and web-patterns-for-non-linear-harness-interfaces.md so the new research is connected into the existing graph, and normalized index.md to 130 pages.
• Added repo ignore rules for local scratch directories and moved the generated Quartz content tree to local git excludes so builds stop cluttering status without hiding the content from Quartz itself.

[2026-04-12] lint | recovery pass

• Ran scripts/lint-wiki.sh after the recovery merge and ignore cleanup.
• Result: pass, 130 content pages checked.

[2026-04-14] ingest | mathcode

• Added 1 raw source summary for the MathCode GitHub repository:
  • math-ai-org-mathcode-github.md
• Added 1 entity page for the mathematical coding agent itself:
  • mathcode.md
• Updated formal-methods synthesis pages so MathCode is linked as a concrete harness example:
  • theorem-proving-as-cognitive-kernel.md
  • formal-cognition-loop.md
• Extended the schema tag taxonomy with mathcode and updated navigation:
  • SCHEMA.md
  • index.md
• Updated index total from 130 to 131.

[2026-04-14] lint | mathcode ingest

• Ran scripts/lint-wiki.sh after adding MathCode to the wiki.
• Result: pass, 131 content pages checked.

[2026-04-14] update | wiki maintenance pass

• Repaired dangling body links in dyflow.md, how-to-build-a-multiplayer-harness-network.md, and multiplayer-agent-harnesses-and-p2p-networks.md so they now resolve to real notes or plain prose rather than aspirational page names.
• Added inbound graph links so the previously orphaned pages sybil-resistance-and-local-trust.md, another-harness-model-docs-drift-checker.md, another-harness-resume-recover-environment.md, and prompt-program-architecture-plans-for-another-harness-and-gas-city.md are now reattached to nearby synthesis pages.
• Updated touched query/entity pages so their updated frontmatter matches the repair pass.

[2026-04-14] lint | wiki maintenance pass

• Ran scripts/lint-wiki.sh after the repair pass.
• Ran an additional cross-link audit for broken wikilinks and orphaned content pages.
• Result: pass, 131 content pages checked, 0 broken wikilinks, 0 orphan pages.

[2026-04-15] lint | pre-commit wiki rerun

• Re-ran scripts/lint-wiki.sh on the current wiki worktree before commit and push.
• Normalized updated frontmatter on the previously touched query/entity/concept pages from 2026-04-14 to 2026-04-15 so the modified-page freshness rule reflects the actual edit date.
• Result: pass, 131 content pages checked.

[2026-04-15] update | gas-city-but-its-just-codex current-structure deep dive

• Added 1 fresh raw repository snapshot grounded in the live worktree rather than only the last clean commit:
  • gas-city-but-its-just-codex-repo-2026-04-15.md
• Rewrote gas-city-but-its-just-codex.md from an early-spike design note into an up-to-date structure tour covering the ledger, formulas, app service, control surfaces, operator daemon, sidecar/UI path, operational center of gravity, and current structural tensions.
• Updated index.md so the query summary and index header date reflect the refreshed deep dive.

[2026-04-15] lint | gas-city-but-its-just-codex deep dive refresh

• Ran scripts/lint-wiki.sh after refreshing the raw note, query page, and index/log metadata.
• Also re-checked broken wikilinks and orphaned content pages after the rewrite.
• Result: pass, 131 content pages checked, 0 broken wikilinks, 0 orphan pages.

[2026-04-15] update | gas-city-but-its-just-codex documentation rendering pass

• Added 1 raw documentation-and-operations bundle so the repo’s architecture, usage, evidence, and implementation notes are preserved as a distinct wiki source layer:
  • gas-city-but-its-just-codex-doc-architecture-and-ops-2026-04-15.md
• Added 3 focused query pages so the repo’s documentation and interesting bits are rendered as separate, navigable wiki surfaces instead of being trapped in one large catch-all note:
  • gas-city-control-plane-and-authority-split.md
  • gas-city-operator-policy-and-formal-bridge.md
  • gas-city-live-ops-benchmarks-and-sandboxes.md
• Updated gas-city-but-its-just-codex.md to point at the new focused subpages and updated index.md to 134 content pages.

[2026-04-15] lint | gas-city documentation rendering pass

• Ran scripts/lint-wiki.sh after adding the new raw note, three focused query pages, and the navigation updates.
• Also re-checked broken wikilinks and orphaned content pages after the rendering pass.
• Result: pass, 134 content pages checked, 0 broken wikilinks, 0 orphan pages.

[2026-04-21] update | nightly src projects desk kickoff

• Added 1 raw survey note grounding a public-safe snapshot of the local /Users/ericfode/src tree:
  • nightly-src-projects-desk-2026-04-21.md
• Added 1 new query page for the first nightly project-news brief:
  • nightly-src-projects-desk-2026-04-21.md
• Added a generated editorial illustration under queries/news-assets/ and wired it into the new desk page.
• Updated index.md with a new News section and a corresponding query listing while bumping the header date/page count.

[2026-04-21] update | nightly journalist loop automation

• Created a nightly Hermes cron job to resurvey /Users/ericfode/src, refresh the public-safe project desk, generate fresh editorial art, run wiki lint, commit the new desk update, and push the wiki repository.
• The loop is configured to use 10 survey lanes over the src/ tree, with recursive subagent fanout requested where the runtime exposes it and a documented parallel-inspection fallback when it does not.

[2026-04-21] lint | nightly src projects desk kickoff

• Ran scripts/lint-wiki.sh after adding the raw survey note, the new desk page, the illustration asset, and the index/log updates.
• Result: pass, 136 content pages checked.